Bioinformatics, Identification and Cloning of β-galactosidase from Lactobacillus plantarum
Keywords:
Lactobacillus plantarum, Probiotics, Cloning, β-galactosidaseAbstract
Lactobacillus plantarum is a lactic acid bacterium, mostly found in fruits and vegetables. It has been used in a variety of food fermentations. It is reported that strains from this species have probiotic activity. In this study, pUC19 was chosen as a vector to clone β-galactosidase gene. To clone this gene we used EcoRI and KpnI restriction enzymes that give a DNA fragment of 5000 bp in length which contains β-galactosidase gene. The same endonuclease enzymes were used to cut the vector (pUC19). To know the length of isolated DNA fragment as well as digested pUC19, agarose gel electrophoresis was used along with Lambda HindIII and Hyperladder I respectively. QIAGEN kit was used to extract DNA fragments from the agarose gel. Then it utilised for ligation in further processes. Furthermore, the DNA fragments were transformed into host cells (E. coli) and they were spread on LB agar plates containing X-gal and IPTG to confirm the presence of inserted DNA.
Downloads
References
Kim, Y., Ryu, B.H., Kim, J., Yoo, W., An, D.R., Kim, B.Y., Kwon, S., Lee, S., Wang, Y., Kim, K.K. & Kim, T.D. (2017). Characterization of a novel SGNH-type esterase from Lactobacillus plantarum. Int. J. Biol. Macromol., 96: 560–568. https://doi.org/10.1016/j.ijbiomac.2016.12.061.
Zhai, Q., Guo, Y., Tang, X., Tian, F., Zhao, J., Zhang, H. & Chen, W. (2019). Removal of cadmium from rice by Lactobacillus plantarum fermentation. Food Control, 96: 357–364. https://doi.org/10.1016/j.foodcont.2018.09.029.
Dong, A.-R., Thuy Ho, V.T., Lo, R., Bansal, N. & Turner, M.S. (2017). A genetic diversity study of antifungal Lactobacillus plantarum isolates. Food Control, 72: 83–89. https://doi.org/10.1016/j.foodcont.2016.07.026.
Aimutis, W.R. (2014). Microflora of the Intestine: Biology of Lactobacillus acidophilus. In: Batt, C.A. & Tortorello, M.L. (eds.), Encyclopedia of Food Microbiology, 2nd Edition. Academic Press. pp. 646-651. https://doi.org/10.1016/B978-0-12-384730-0.00209-3.
Zeng, Z., Luo, J., Zuo, F., Zhang, Y., Ma, H. & Chen, S. (2016). Screening for potential novel probiotic Lactobacillus strains based on high dipeptidyl peptidase IV and α-glucosidase inhibitory activity. J. Funct. Foods, 20: 486–495. https://doi.org/10.1016/j.jff.2015.11.030.
Imran, M.Y., Reehana, N., Jayaraj, K.A., Ahamed, A.A., Dhanasekaran, D., Thajuddin, N., Alharbi, N.S. & Muralitharan, G. (2016). Statistical optimization of exopolysaccharide production by Lactobacillus plantarum NTMI05 and NTMI20. Int. J. Biol. Macromol., 93: 731–745. https://doi.org/10.1016/j.ijbiomac.2016.09.007.
Kleerebezem, M., Boekhorst, J., van Kranenburg, R., Molenaar, D., Kuipers, O.P., Leer, R., Tarchini, R., Peters, S.A., Sandbrink, H.M., Fiers, M.W., Stiekema, W., Lankhorst, R.M., Bron, P.A., Hoffer, S.M., Groot, M.N., Kerkhoven, R., de Vries, M., Ursing, B., de Vos, W.M. & Siezen, R.J. (2003). Complete genome sequence of Lactobacillus plantarum WCFS1. Proc. Natl. Acad. Sci. USA, 100(4): 1990–1995. https://doi.org/10.1073/pnas.0337704100.
Nguyen, T.H., Splechtna, B., Yamabhai, M., Haltrich, D. & Peterbauer, C. (2007). Cloning and expression of the β-galactosidase genes from Lactobacillus reuteri in Escherichia coli. J. Biotechnol., 129(4): 581–591. https://doi.org/10.1016/j.jbiotec.2007.01.034.
Untergasser, A. (2008). Ligation. Untergasser's Lab. Retrieved from http://www.untergasser.de/lab/protocols/ligation_v1_0.htm.
Sayers, E.W., Barrett, T., Benson, D.A., Bryant, S.H., Canese, K., Chetvernin, V., Church, D.M., DiCuccio, M., Edgar, R., Federhen, S., Feolo, M., Geer, L.Y., Helmberg, W. et al. (2009). Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 37(Suppl. 1): D5–D15. https://doi.org/10.1093/nar/gkp382.
Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J. & Sayers, E.W. (2009). GenBank. Nucleic Acids Res., 37: D26–D31. https://doi.org/10.1093/nar/gkn723.
Vincze, T., Posfai, J. & Roberts, R.J. (2003). NEBcutter: A program to cleave DNA with restriction enzymes. Nucleic Acids Res., 31(13): 3688–3691. https://doi.org/10.1093/nar/gkg526.
Geeta & Yadav, A.S. (2017). Antioxidant and antimicrobial profile of chicken sausages prepared after fermentation of minced chicken meat with Lactobacillus plantarum and with additional dextrose and starch. LWT, 77: 249–258. https://doi.org/10.1016/j.lwt.2016.11.050.
Jiang, Y. & Yang, Z. (2018). A functional and genetic overview of exopolysaccharides produced by Lactobacillus plantarum. J. Funct. Foods, 47: 229–240. https://doi.org/10.1016/j.jff.2018.05.060.
Madsen, K., Cornish, A., Soper, P., McKaigney, C., Jijon, H., Yachimec, C., Doyle, J., Jewell, L. & De Simone, C. (2001). Probiotic bacteria enhance murine and human intestinal epithelial barrier function. Gastroenterology, 121(3): 580–591. https://doi.org/10.1053/gast.2001.27224.
Raven, N.D., Kelly, C.D., Carter, N.D., Eastlake, P., Brown, C. & Williams, R.A. (1993). A new restriction endonuclease, TspEI, from the genus Thermus that generates cohesive termini compatible with those of EcoRI. Gene, 131(1): 83–86. https://doi.org/10.1016/0378-1119(93)90672-p.
Hammond, A.W., Gerard, G.F. & Chatterjee, D.K. (1991). Cloning the KpnI restriction-modification system in Escherichia coli. Gene, 97(1): 97–102. https://doi.org/10.1016/0378-1119(91)90014-3.
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2019 The author(s) retains the copyright of this article.
This work is licensed under a Creative Commons Attribution 4.0 International License.
This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.